Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-109   GLY-110  0.7 0.4 12.1 16.6 45.9 49.3 121.4
 LEU-109   GLY-110  5.0 5.0 12.1 16.6 83.3 86.6 41.5
 GLY-110   ILE-111  4.2 4.0 -5.7 -2.0 22.7 20.5 64.2
 LEU-109   GLY-110  0.7 0.4 12.1 16.6 45.9 49.3 121.4
 LEU-109   GLY-110  5.0 5.0 12.1 16.6 83.3 86.6 41.5
 GLY-110   ILE-111  4.2 4.0 -5.7 -2.0 22.7 20.5 64.2
 ILE-111   SER-112  5.5 5.5 8.6 -2.3 111.0 115.2 -9.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-192   GLU-193  7.0 7.0 -12.9 2.1 39.9 41.0 78.3
 GLU-193   SER-194  6.3 6.2 7.3 2.6 74.4 75.3 22.4
 SER-194   THR-195  3.5 3.6 -2.3 10.8 103.0 103.3 18.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees