Glutamate Receptor, Ionotropic Kainate 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-96   MET-97  10.4 10.5 -26.9 25.9 119.8 115.1 -9.6
 MET-97   THR-98  6.8 6.9 0.1 -39.1 131.9 136.7 103.6
 THR-98   LEU-99  3.8 4.2 2.5 -4.5 58.5 64.3 -24.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-202   SER-203  5.0 5.6 5.1 39.5 120.6 93.9 -42.8
 SER-203   LYS-204  1.9 2.3 1.3 -6.3 67.4 99.9 37.4
 LYS-204   GLY-205  1.9 1.3 -48.5 -12.4 43.8 54.8 144.0
 GLY-205   TYR-206  5.1 4.1 -17.8 1.6 68.7 76.6 -32.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-239   TRP-240  9.4 10.6 6.8 -0.4 79.9 80.3 22.2
 TRP-240   TRP-241  7.1 8.1 -15.2 6.1 88.8 93.8 -25.6
 TRP-241   ARG-242  3.8 4.8 -17.1 -19.0 142.6 138.1 -98.7
 ARG-242   GLY-243  5.1 5.7 13.2 10.4 43.6 24.4 97.5
 SER-244   GLY-245  3.6 36.3 -113.1 6.2 50.9 82.6 200.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees