Lactoferrin

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-326   ALA-327  11.4 11.1 -7.3 -3.4 116.7 117.8 34.7
 ALA-327   ILE-328  14.3 13.9 14.7 -13.4 27.4 20.8 43.3
 ILE-328   GLN-329  12.9 12.8 6.1 -9.5 95.1 93.7 43.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-679   SER-680  15.8 15.8 -68.4 72.2 75.8 56.3 1.9
 SER-680   PRO-681  13.3 13.2 8.9 -10.9 146.5 145.4 71.9
 PRO-681   LEU-682  11.7 11.8 10.9 7.9 85.6 85.1 67.1
 LEU-682   LEU-683  8.3 8.4 6.9 -16.5 114.6 111.2 161.2
 LEU-682   LEU-683  8.3 8.4 6.9 -16.5 114.6 111.2 161.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-682   LEU-683  8.3 8.4 6.9 -16.5 114.6 111.2 161.2
 LEU-682   LEU-683  8.3 8.4 6.9 -16.5 114.6 111.2 161.2
 LEU-683   GLU-684  10.3 10.5 -0.3 -3.9 136.0 137.4 -125.5
 GLU-684   ALA-685  12.3 12.4 -4.2 2.9 128.7 120.2 79.4
 ALA-685   CYS-686  9.3 9.2 11.4 -2.5 111.5 118.9 -12.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees