RNA Polymerase Beta Subunit

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-472   ARG-473  9.6 11.3 -29.7 -5.4 96.9 131.3 -49.6
 ARG-473   VAL-474  7.1 9.1 4.9 33.2 97.4 77.5 -7.5
 VAL-474   VAL-475  3.5 5.8 -66.9 145.6 112.8 86.8 -143.1
 VAL-475   GLY-476  3.2 5.6 -123.3 176.2 74.5 142.7 -0.6
 GLY-476   GLY-477  4.2 7.1 -48.0 21.0 48.2 102.3 7.6
 GLY-477   VAL-478  3.6 10.4 63.9 -70.6 72.8 68.4 -7.6
 VAL-478   VAL-479  1.8 10.7 13.3 -33.3 103.6 144.4 8.3
 VAL-479   THR-480  3.6 12.2 -16.8 14.2 133.5 109.5 -3.3
 THR-480   ASP-481  6.3 12.8 3.0 -41.4 106.6 133.0 23.8
 ASP-481   GLU-482  10.1 16.0 63.3 1.1 65.5 83.6 22.9
 GLU-482   VAL-483  10.6 16.1 -108.7 -161.1 42.6 41.6 -92.5
 VAL-483   VAL-484  12.7 18.8 43.3 24.1 76.4 150.9 304.3
 VAL-484   TYR-485  14.3 18.4 -140.8 15.0 45.0 83.4 -282.3
 TYR-485   MET-486  17.6 18.9 -115.5 63.5 84.8 103.6 2.1
 MET-486   THR-487  17.6 15.3 1.9 -97.8 126.2 128.6 111.1
 THR-487   ALA-488  20.7 14.1 -122.6 -28.1 33.3 124.8 -36.6
 ALA-488   THR-489  20.8 11.9 146.9 124.8 84.6 112.3 -60.1
 THR-489   GLU-490  21.5 9.6 87.3 113.7 62.1 140.8 118.1
 GLU-490   GLU-491  18.8 9.1 -130.2 -105.5 56.6 103.9 -78.6
 GLU-491   ASP-492  16.2 6.6 -161.4 -73.0 58.1 42.1 -107.7
 ASP-492   ARG-493  17.2 4.5 -174.9 -33.7 121.7 81.8 171.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-507   ILE-508  6.1 2.2 -23.9 24.9 159.6 123.4 -11.6
 ILE-508   ALA-509  4.2 0.8 -42.2 13.0 118.0 57.4 -0.6
 ALA-509   ALA-510  7.1 4.2 177.4 -27.6 42.8 53.0 115.9
 ALA-510   GLU-511  6.7 7.6 -38.1 -62.8 85.3 55.0 43.2
 GLU-511   ARG-512  7.8 10.7 -162.7 151.8 119.5 124.2 -10.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-514   ALA-515  3.0 11.2 30.4 22.9 137.8 137.0 391.0
 ALA-515   ARG-516  5.9 7.9 -70.3 78.1 121.5 95.6 -11.5
 ARG-516   ARG-517  9.4 8.5 -2.4 83.7 53.1 80.5 -116.2
 ARG-517   LYS-518  12.4 6.0 88.4 -93.6 74.8 144.8 12.2
 LYS-518   GLY-519  15.6 5.0 92.2 141.0 7.8 140.8 -39.7
 GLY-519   GLU-520  15.5 6.3 -58.2 170.5 130.1 53.8 11.3
 GLU-520   PRO-521  13.3 5.3 -39.3 2.6 79.1 44.4 50.3
 PRO-521   VAL-522  9.5 6.8 -139.9 -155.1 77.0 73.3 7.8
 VAL-522   ILE-523  8.6 8.4 -81.1 -72.6 67.4 8.9 -215.9
 ILE-523   VAL-524  6.6 7.3 56.4 24.8 148.5 102.9 348.6
 VAL-524   SER-525  7.2 6.2 -161.9 41.5 68.4 68.3 -245.1
 SER-525   PRO-526  7.1 2.9 16.2 -6.5 142.4 65.3 -1.9
 PRO-526   GLU-527  4.8 1.1 -50.3 -78.6 34.0 171.9 66.9
 GLU-527   GLU-528  7.1 1.6 -168.2 32.6 91.1 98.0 30.6
 GLU-528   VAL-529  7.9 4.6 79.9 126.0 88.3 108.3 5.1
 VAL-529   GLU-530  5.0 6.9 -111.9 -110.0 28.9 105.3 -98.3
 GLU-530   PHE-531  6.7 7.4 84.2 48.0 92.4 23.7 137.1
 PHE-531   MET-532  7.1 5.0 -78.8 -48.1 145.1 95.6 -76.9
 MET-532   ASP-533  6.8 7.1 -34.4 -12.9 99.3 103.8 -8.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees