Hiv-1 Reverse Transcriptase (Subunit P66)
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
THR-216
PRO-217
23.8
22.8
58.5
-25.5
18.3
33.0
71.2
PRO-217
ASP-218
22.8
20.6
-10.1
-10.1
99.9
81.0
1.4
ASP-218
LYS-219
21.3
20.5
-173.4
47.0
101.2
104.5
-54.9
LYS-219
LYS-220
18.3
17.8
-115.4
27.0
30.5
139.3
-72.9
LYS-220
HIS-221
16.6
16.5
82.3
38.9
89.2
89.1
-92.4
HIS-221
GLN-222
13.5
16.9
53.2
-112.7
70.2
150.2
74.7
GLN-222
LYS-223
15.3
14.8
170.6
63.3
80.5
83.9
58.0
LYS-223
GLU-224
12.4
11.5
-144.8
-80.7
64.4
62.6
250.5
GLU-224
PRO-225
8.7
8.7
34.6
12.0
161.3
110.6
-88.3
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PHE-227
LEU-228
8.0
6.8
-22.6
24.4
105.9
101.5
11.8
LEU-228
TRP-229
9.1
8.4
40.0
-42.6
43.0
53.3
17.7
TRP-229
MET-230
10.6
10.6
15.4
-23.0
66.9
58.8
13.0
MET-230
GLY-231
12.1
13.5
-0.1
29.4
117.7
90.8
15.9
MET-230
GLY-231
12.1
13.5
-0.1
29.4
117.7
90.8
15.9
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
MET-230
GLY-231
12.1
13.5
-0.1
29.4
117.7
90.8
15.9
MET-230
GLY-231
12.1
13.5
-0.1
29.4
117.7
90.8
15.9
GLY-231
TYR-232
10.4
12.7
10.5
-34.0
106.7
100.4
12.8
TYR-232
GLU-233
7.0
9.0
70.5
-68.7
55.7
44.1
-5.0
GLU-233
LEU-234
4.7
5.8
-14.3
3.9
52.2
57.8
26.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PRO-313
VAL-314
11.0
11.4
-37.1
21.7
153.3
152.4
-38.7
VAL-314
HIS-315
9.3
10.9
0.3
28.5
87.4
78.5
10.5
HIS-315
GLY-316
5.9
7.5
-21.9
75.5
143.6
167.3
115.5
GLY-316
VAL-317
4.7
5.9
-39.7
-0.3
95.7
96.0
-11.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees