Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-108   LEU-109  3.5 3.5 -14.2 5.9 52.5 52.0 33.9
 LEU-109   GLY-110  0.4 0.6 6.2 16.1 53.6 57.5 61.2
 GLY-110   ILE-111  3.8 3.9 -8.7 -2.4 52.4 51.7 21.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-215   ASP-216  9.2 9.4 -3.6 4.7 36.1 34.5 4.5
 ASP-216   SER-217  6.2 6.3 -3.0 -2.5 104.7 105.7 2.1
 SER-217   LYS-218  2.4 2.7 -9.9 -14.6 78.7 66.7 52.7
 LYS-218   GLY-219  2.5 2.1 16.9 6.3 66.0 53.1 44.1
 GLY-219   TYR-220  4.6 4.7 18.2 -2.5 77.4 78.5 1.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-255   TYR-256  5.1 5.2 -5.8 -4.6 47.7 46.3 30.3
 TYR-256   ASP-257  6.9 6.4 4.1 16.8 141.6 139.9 -61.2
 ASP-257   LYS-258  9.6 9.4 -6.3 -19.7 47.2 27.2 105.4
 LYS-258   GLY-259  7.4 7.4 16.2 10.0 97.3 89.4 -4.0
 GLY-259   GLU-260  4.3 4.0 -11.4 12.4 13.9 19.5 -5.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees