Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-115   ILE-116  3.7 3.7 -21.7 1.7 47.7 52.5 64.8
 ILE-116   VAL-117  2.5 2.2 0.3 9.2 105.0 111.3 4.6
 VAL-117   ASP-118  1.6 2.8 -8.6 13.4 132.9 130.9 19.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-157   ASP-158  10.6 10.0 -4.1 23.5 93.1 80.5 -5.4
 ASP-158   ASP-159  6.9 6.8 -39.5 14.5 27.0 35.0 30.6
 ASP-159   GLN-160  6.4 6.3 -41.8 44.5 82.6 88.6 32.8
 GLN-160   GLU-161  6.2 7.1 -29.9 3.3 88.8 80.2 1.7
 GLU-161   GLU-162  4.9 6.5 9.8 7.6 36.3 38.3 27.3
 GLU-162   THR-163  4.7 7.1 -22.8 13.8 114.7 113.1 -21.4
 THR-163   VAL-164  2.0 3.9 -6.2 -1.2 49.6 53.3 3.1
 VAL-164   ARG-165  0.3 2.0 -1.1 -9.7 98.8 90.7 -9.6
 ARG-165   LYS-166  3.5 5.1 16.0 -10.2 38.2 32.4 17.7
 LYS-166   ARG-167  3.2 4.9 0.1 8.4 103.1 90.9 -2.6
 ARG-167   LEU-168  4.2 3.5 -8.6 0.5 57.5 58.8 13.4
 LEU-168   VAL-169  6.2 6.0 -8.0 2.6 122.3 117.0 -15.7
 VAL-169   GLU-170  8.3 8.8 -2.0 10.9 121.3 131.9 7.5
 GLU-170   TYR-171  8.6 8.3 -11.9 1.4 51.3 64.8 1.4
 TYR-171   HIS-172  10.2 9.3 1.9 4.4 94.7 108.7 2.2
 HIS-172   GLN-173  12.4 11.9 -6.3 5.2 143.6 132.2 -2.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees