Hypothetical Protein Ydde

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-8   ASP-9  4.4 4.3 3.1 -5.3 80.1 80.5 27.4
 ASP-9   ALA-10  2.4 2.2 5.1 -8.1 164.7 164.4 17.8
 ALA-10   PHE-11  1.4 1.3 -1.8 -0.5 78.7 80.3 -25.1
 PHE-11   THR-12  4.5 4.5 5.4 -5.3 112.1 113.8 4.8
 PHE-11   THR-12  4.5 4.5 5.4 -5.3 112.1 113.8 4.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-11   THR-12  4.5 4.5 5.4 -5.3 112.1 113.8 4.8
 PHE-11   THR-12  4.5 4.5 5.4 -5.3 112.1 113.8 4.8
 THR-12   SER-13  6.7 6.6 -2.1 -1.4 96.5 98.3 11.5
 SER-13   GLN-14  8.9 8.6 4.8 -4.7 153.1 152.9 -11.3
 GLN-14   PRO-15  10.1 9.9 -1.7 -0.2 46.3 46.2 27.2
 PRO-15   PHE-16  8.6 8.3 -0.5 -3.9 49.6 48.3 -13.2
 PHE-16   ARG-17  6.8 6.4 4.8 0.8 70.1 69.6 -17.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-20   ALA-21  1.0 1.4 2.3 0.6 78.1 78.5 20.9
 ALA-21   GLY-22  4.2 4.4 1.1 -6.4 99.5 100.6 1.3
 GLY-22   VAL-23  7.3 7.4 6.6 -2.9 29.3 32.0 37.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-106   ILE-107  3.4 3.4 -2.8 6.0 131.3 131.7 24.3
 ILE-107   GLU-108  4.5 4.6 -8.3 0.0 58.7 57.4 73.3
 GLU-108   LYS-109  5.6 5.3 -0.2 2.9 125.6 125.9 -24.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-282   GLY-283  4.2 4.4 -1.2 -6.5 30.4 35.8 102.4
 GLY-283   THR-284  3.6 3.8 12.6 -1.8 95.6 98.3 -65.3
 THR-284   ALA-285  4.1 4.1 -4.3 9.4 17.8 18.5 -19.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees