Glutamate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-201   SER-202  7.2 6.9 6.2 -5.0 91.9 93.3 12.1
 SER-202   LEU-203  3.5 3.2 7.0 -12.1 107.5 110.8 -0.2
 LEU-203   VAL-204  2.5 2.2 3.2 4.6 27.2 33.4 66.5
 VAL-204   ARG-205  5.1 4.9 12.0 1.6 48.4 44.0 49.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-373   ALA-374  9.3 9.3 -10.2 2.2 103.7 107.3 -10.6
 ALA-374   GLY-375  5.5 5.5 -2.2 12.8 159.6 158.4 56.5
 GLY-375   GLY-376  5.4 5.4 -1.7 1.9 124.7 119.9 -14.9
 GLY-376   VAL-377  6.4 6.1 -0.9 5.5 77.6 76.7 6.4
 VAL-377   LEU-378  5.1 4.5 -14.8 7.4 108.2 113.3 -25.8
 LEU-378   VAL-379  1.4 0.9 -0.1 -1.0 164.1 160.5 35.9
 VAL-379   SER-380  2.3 1.6 7.2 -8.2 82.2 82.3 -20.2
 SER-380   GLY-381  5.5 4.9 6.7 -1.8 99.5 102.4 22.6
 GLY-381   PHE-382  5.1 4.8 1.8 -2.6 38.2 39.9 -10.7
 PHE-382   GLU-383  3.9 3.9 9.0 -2.3 42.5 41.5 19.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-393   THR-394  5.2 5.4 -12.9 9.2 60.7 59.3 40.7
 THR-394   ALA-395  4.8 5.2 -1.5 1.3 132.0 132.0 14.7
 ALA-395   GLU-396  4.8 5.1 -2.0 1.9 125.4 124.6 -5.4
 GLU-396   GLU-397  8.2 8.5 -1.7 -3.0 139.8 139.0 -14.8
 GLU-397   VAL-398  7.4 7.8 15.1 -6.6 43.6 41.6 13.9
 VAL-398   ASP-399  4.2 4.8 1.9 -0.7 58.2 53.1 1.1
 ASP-399   SER-400  6.9 7.3 0.0 6.7 53.0 52.3 59.4
 SER-400   LYS-401  9.2 9.6 -2.6 -2.4 146.9 146.5 -57.5
 LYS-401   LEU-402  7.1 7.5 0.2 -2.9 55.4 47.0 27.2
 LEU-402   HIS-403  5.6 6.0 7.1 0.0 56.1 56.2 35.3
 HIS-403   GLN-404  9.2 9.7 -7.5 6.1 141.0 140.5 3.2
 GLN-404   VAL-405  9.9 10.2 -6.4 0.6 143.0 141.5 -55.2
 VAL-405   MET-406  6.8 7.0 4.7 0.8 61.1 55.8 27.3
 MET-406   THR-407  7.6 7.7 -3.9 4.8 128.9 133.0 9.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-429   ALA-430  6.8 6.8 2.9 1.5 47.1 47.7 3.5
 ALA-430   ASN-431  5.2 5.1 4.7 -5.7 117.9 119.4 -22.6
 ASN-431   ILE-432  4.1 3.9 -5.1 -0.4 70.6 69.9 26.9
 ILE-432   VAL-433  1.8 2.0 5.3 -4.9 48.4 47.7 -4.6
 VAL-433   GLY-434  2.5 2.7 12.8 -13.7 68.0 65.0 50.6
 GLY-434   PHE-435  1.2 1.2 -3.6 4.0 49.8 50.6 10.2
 PHE-435   GLN-436  3.1 3.1 3.7 -5.4 97.3 101.7 53.1
 GLN-436   LYS-437  4.5 4.4 -0.2 1.9 127.9 125.8 -22.4
 LYS-437   ILE-438  6.5 6.5 5.4 -6.2 97.1 97.1 3.8
 ILE-438   ALA-439  7.6 7.7 -5.4 6.9 33.4 32.1 -7.5
 ALA-439   ASP-440  8.4 8.4 -2.6 -3.6 93.3 93.0 -4.5
 ASP-440   ALA-441  10.5 10.3 7.2 -8.0 62.5 60.0 26.0
 ALA-441   MET-442  12.2 12.3 7.7 -1.7 121.7 118.6 -34.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees