Precursor Of Periplasmic Sugar Receptor

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-111   THR-112  5.9 5.3 -0.9 2.2 106.1 101.1 -9.1
 THR-112   ASP-113  2.6 1.9 -6.5 -7.1 50.5 52.9 61.0
 ASP-113   ASN-114  2.7 2.3 4.2 8.1 51.5 58.1 33.9
 ASN-114   VAL-115  6.0 5.8 -12.4 4.9 81.1 80.5 -7.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-244   VAL-245  6.1 6.4 7.6 -3.2 36.6 41.4 -4.1
 VAL-245   ALA-246  4.9 5.1 0.6 -13.2 91.1 88.3 16.8
 ALA-246   GLN-247  1.2 1.6 -8.1 38.8 149.3 145.2 60.0
 GLN-247   ASN-248  1.7 1.5 -11.2 2.9 73.8 70.0 20.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-279   LEU-280  6.1 5.8 -13.8 8.0 141.2 145.6 -22.3
 LEU-280   VAL-281  3.4 3.2 -10.9 7.2 139.0 129.8 0.4
 VAL-281   ASP-282  4.2 4.8 2.1 -3.4 65.3 59.4 -14.5
 ASP-282   SER-283  3.7 5.0 -8.3 28.4 147.8 157.5 63.5
 SER-283   ILE-284  2.4 3.6 -1.2 25.9 116.3 122.9 53.5
 ILE-284   LEU-285  5.2 5.9 -14.0 -8.5 137.0 125.0 -45.6
 LEU-285   VAL-286  6.9 7.4 -5.4 -0.8 153.0 156.7 1.8
 VAL-286   THR-287  6.3 7.1 3.8 -6.5 54.7 59.0 13.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees