Glutamate Receptor Ionotropic, Kainate 3,Glutamate Receptor Ionotropic, Kainate 3

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-51   GLU-52  10.0 15.1 -10.8 36.0 86.7 83.5 1.2
 GLU-52   ILE-53  13.1 18.2 -9.2 -13.3 45.2 70.2 8.2
 ILE-53   ARG-54  15.7 18.1 -8.5 16.9 48.6 55.5 -5.4
 ARG-54   LEU-55  17.1 20.1 3.2 8.6 126.4 99.0 -2.5
 LEU-55   VAL-56  19.7 21.7 5.2 -54.5 161.7 164.9 32.2
 VAL-56   GLU-57  19.1 20.9 -46.2 8.6 64.4 85.2 -1.6
 GLU-57   ASP-58  20.7 24.5 -160.3 20.8 56.1 62.5 67.7
 ASP-58   GLY-59  22.0 25.3 146.4 155.1 65.1 170.9 19.5
 GLY-59   LYS-60  23.1 25.0 107.3 21.5 115.3 96.6 -93.1
 LYS-60   TYR-61  22.0 26.3 -157.8 19.3 108.5 30.3 72.6
 TYR-61   GLY-62  20.3 24.4 16.2 88.9 129.7 91.7 -72.5
 GLY-62   ALA-63  18.5 21.6 -107.0 25.8 37.3 133.2 11.4
 ALA-63   GLN-64  19.1 23.6 9.7 45.6 135.8 105.5 95.6
 GLN-64   ASP-65  17.2 26.6 22.9 27.4 140.3 89.1 -32.7
 ASP-65   ASP-66  18.0 30.2 -67.3 142.7 36.3 154.2 -6.1
 ASP-66   LYS-67  17.2 31.7 60.7 -46.4 91.8 45.3 2.2
 LYS-67   GLY-68  13.5 28.3 152.1 138.6 38.8 112.1 -21.7
 GLY-68   GLN-69  13.1 26.1 139.3 -20.3 36.8 61.2 65.7
 GLN-69   TRP-70  12.9 22.4 -13.3 -37.6 136.7 107.8 -21.6
 TRP-70   ASN-71  14.2 22.0 -5.3 -24.2 114.0 119.9 -11.1
 ASN-71   GLY-72  16.5 19.0 11.2 151.8 22.3 66.3 -88.4
 GLY-72   MET-73  17.7 17.5 -70.9 -34.1 126.4 69.3 68.6
 MET-73   VAL-74  15.7 15.5 156.5 -44.9 117.0 37.6 -50.3
 VAL-74   LYS-75  13.9 13.7 139.5 -37.3 112.7 113.6 -53.2
 LYS-75   GLU-76  12.5 14.2 177.3 114.4 43.3 58.9 164.8
 GLU-76   LEU-77  12.0 13.9 103.7 -44.5 74.4 14.7 -148.3
 LEU-77   ILE-78  9.4 12.1 -158.2 -104.5 43.3 93.6 152.8

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Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees