Glutamate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-184   LEU-185  4.1 4.3 -6.4 13.8 90.0 81.9 1.1
 LEU-185   GLY-186  5.9 6.2 -11.2 5.0 11.6 7.2 38.8
 GLY-186   ARG-187  7.5 7.7 -8.3 17.2 53.0 59.4 -58.8
 ARG-187   GLY-188  8.2 8.4 -23.7 12.5 69.1 65.5 82.6
 GLY-188   THR-189  11.9 12.1 15.8 -20.2 141.6 143.9 30.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-345   GLY-346  5.3 5.6 3.0 8.2 158.9 153.7 -88.8
 GLY-346   GLY-347  5.6 5.9 -17.0 12.6 49.3 42.2 26.8
 GLY-347   VAL-348  7.0 7.4 1.2 -4.2 98.9 99.2 61.7
 VAL-348   THR-349  5.6 5.9 0.8 3.7 109.8 107.2 -13.7
 THR-349   VAL-350  2.0 2.2 2.6 0.6 176.2 172.3 -27.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-367   GLU-368  10.8 10.3 5.1 4.3 117.5 120.0 -59.0
 GLU-368   VAL-369  8.4 8.0 -4.5 -1.2 43.6 43.7 30.6
 VAL-369   ARG-370  5.8 5.4 -0.3 -2.4 35.7 38.4 19.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-400   VAL-401  4.2 4.6 -2.7 11.9 106.9 103.4 -20.3
 VAL-401   VAL-402  4.1 4.1 -23.5 19.3 41.0 35.4 2.8
 VAL-402   ALA-403  3.9 3.9 -0.3 -18.0 49.8 52.8 89.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees