Nad(p) Transhydrogenase Subunit Alpha Part 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-38   ALA-39  14.7 14.5 -16.0 11.2 69.3 69.2 34.4
 ALA-39   GLY-40  11.0 10.7 -7.6 5.4 13.6 12.3 36.9
 GLY-40   VAL-41  11.0 10.9 -24.0 18.2 50.7 49.0 54.2
 VAL-41   GLY-42  14.0 14.1 7.9 -5.7 37.6 39.3 -9.0
 VAL-41   GLY-42  14.0 14.1 7.9 -5.7 37.6 39.3 -9.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-41   GLY-42  14.0 14.1 7.9 -5.7 37.6 39.3 -9.0
 VAL-41   GLY-42  14.0 14.1 7.9 -5.7 37.6 39.3 -9.0
 GLY-42   ALA-43  12.3 12.5 -2.6 -2.3 128.2 135.4 -37.9
 ALA-43   SER-44  10.0 10.2 15.1 5.1 70.2 73.1 86.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-133   MET-134  11.6 11.8 7.4 -0.9 31.9 33.5 65.3
 MET-134   ASP-135  10.6 10.6 -6.0 17.7 81.1 81.5 73.6
 ASP-135   ILE-136  9.8 9.7 -5.9 5.4 78.1 80.2 -69.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-137   SER-138  8.6 8.4 4.7 1.3 27.7 21.9 36.4
 SER-138   SER-139  7.9 7.9 -7.3 4.0 97.2 100.9 -11.4
 SER-139   GLN-140  4.5 4.5 0.3 5.9 82.6 84.6 -22.3
 GLN-140   SER-141  3.9 3.6 -4.7 10.7 140.5 140.3 59.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-333   LEU-334  6.1 6.4 -11.1 13.8 101.8 98.4 -18.7
 LEU-334   PHE-335  4.4 4.6 -2.8 -3.6 43.3 38.0 33.3
 PHE-335   ALA-336  2.6 2.7 6.3 -1.8 138.3 135.9 -37.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees