Glycogen [Starch] Synthase Isoform 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-380   THR-381  6.1 6.2 -2.7 0.6 81.6 75.4 11.3
 THR-381   VAL-382  2.9 3.0 -9.4 7.8 36.3 33.8 5.1
 VAL-382   HIS-383  1.7 1.8 -6.4 -3.0 33.2 35.5 43.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-399   TYR-400  12.9 13.0 25.1 -17.3 60.0 54.8 36.8
 TYR-400   PRO-401  12.9 12.7 -6.3 29.1 168.8 160.2 -88.3
 GLU-415   LEU-416  13.2 12.8 131.6 13.2 97.6 69.6 184.0
 LEU-416   LEU-417  9.4 9.8 22.0 20.7 160.5 144.5 -158.5
 LEU-417   LYS-418  9.2 8.8 5.3 21.1 124.2 116.8 -37.0
 LYS-418   SER-419  11.2 11.3 -5.1 0.4 6.9 11.6 24.1
 SER-419   SER-420  12.1 12.3 11.1 4.5 120.0 118.5 -16.1
 SER-420   ASP-421  10.3 10.7 -8.9 -13.1 97.6 87.2 13.2
 ASP-421   LYS-422  7.1 7.2 9.4 7.3 128.1 121.9 -44.7
 LYS-422   VAL-423  8.1 8.1 0.8 -8.1 162.5 164.1 40.5
 VAL-423   MET-424  8.2 8.1 3.4 1.7 105.0 106.3 -40.3
 MET-424   LEU-425  4.9 5.0 -2.9 5.6 96.3 100.1 -10.1
 LEU-425   LYS-426  3.5 3.6 -12.6 13.3 36.0 36.2 1.0
 LYS-426   ARG-427  5.7 5.9 -11.0 6.6 34.5 35.4 21.8
 ARG-427   ARG-428  3.4 3.6 -5.4 -2.1 93.1 91.3 27.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees