Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-107   LEU-108  7.7 6.7 20.6 -10.5 111.2 117.1 -26.3
 LEU-108   GLY-109  4.5 3.3 -9.4 21.7 136.7 137.5 19.1
 GLY-109   ILE-110  2.7 2.1 -52.9 27.6 60.1 66.1 39.9
 ILE-110   SER-111  4.6 4.2 1.7 -11.7 117.4 109.3 14.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-208   GLY-209  13.0 13.1 29.2 -34.5 99.6 91.4 -15.8
 GLY-209   LEU-210  11.5 10.6 7.5 11.2 101.0 112.4 -21.0
 LEU-210   ILE-211  8.0 7.3 -0.3 15.1 25.1 24.7 -35.4
 ILE-211   ASP-212  7.1 7.2 -170.8 139.3 72.0 45.7 12.6
 ASP-212   SER-213  4.1 4.1 126.9 -90.7 72.1 61.5 59.8
 SER-213   LYS-214  4.6 3.3 1.5 7.3 99.1 103.4 12.4
 LYS-214   GLY-215  4.0 3.4 14.5 -5.9 39.8 43.0 17.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees