Gamma Crystallin D

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-35   ARG-36  9.9 10.0 -4.1 3.3 98.8 96.7 -102.1
 ARG-36   VAL-37  13.0 13.1 -7.2 10.0 127.8 126.3 225.8
 VAL-37   ASP-38  13.8 13.8 -8.2 -7.5 86.8 86.4 167.2
 ASP-38   SER-39  17.2 17.0 2.5 0.7 29.0 31.1 203.9
 SER-39   GLY-40  17.8 17.4 -8.0 2.8 128.5 124.0 21.7
 GLY-40   CYS-41  15.9 15.5 -19.7 14.6 94.2 101.4 -126.4
 CYS-41   TRP-42  12.4 12.4 1.3 0.2 103.3 101.6 -217.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-53   GLN-54  5.4 5.4 0.0 -1.8 76.6 77.5 14.9
 GLN-54   TYR-55  3.0 3.0 0.8 -1.4 81.7 81.9 1.1
 TYR-55   PHE-56  5.7 5.7 1.1 -2.4 92.9 91.9 9.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-74   VAL-75  5.6 5.5 4.0 -1.6 54.3 54.2 67.5
 VAL-75   ARG-76  1.9 1.8 -3.0 2.9 72.1 71.6 17.7
 ARG-76   SER-77  3.2 3.3 -2.6 1.0 118.3 118.8 -7.7
 SER-77   CYS-78  4.0 4.1 1.9 -1.0 114.2 114.1 16.6
 SER-77   CYS-78  4.0 4.1 1.9 -1.0 114.2 114.1 16.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-77   CYS-78  4.0 4.1 1.9 -1.0 114.2 114.1 16.6
 SER-77   CYS-78  4.0 4.1 1.9 -1.0 114.2 114.1 16.6
 CYS-78   ARG-79  5.0 4.9 0.4 7.9 122.4 122.8 -13.5
 ARG-79   LEU-80  7.5 7.5 3.8 -2.0 93.0 87.3 11.4
 LEU-80   ILE-81  10.7 10.7 -6.3 9.2 6.9 6.8 -142.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees