T4 Lysozyme

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-2   ILE-3  11.6 10.7 -1.9 7.9 80.7 72.5 3.2
 ILE-3   PHE-4  8.2 7.2 -19.5 12.7 43.4 36.5 3.2
 PHE-4   GLU-5  7.0 6.0 2.3 0.3 150.3 150.5 -0.6
 GLU-5   MET-6  8.8 8.3 -2.5 -14.8 94.4 80.3 14.5
 MET-6   LEU-7  8.9 8.4 8.0 5.3 105.5 106.9 -20.6
 LEU-7   ARG-8  5.4 5.0 2.7 -15.6 157.5 156.8 37.2
 ARG-8   ILE-9  4.9 4.3 11.5 -3.8 125.4 132.4 -19.1
 ILE-9   ASP-10  7.5 7.2 15.0 -24.1 81.4 91.2 -6.4
 ASP-10   GLU-11  7.9 7.5 28.7 -12.6 109.9 108.1 -16.4
 GLU-11   GLY-12  5.1 4.7 29.6 -34.8 146.8 151.1 18.2
 GLY-12   LEU-13  2.6 2.8 31.3 -23.3 76.4 78.3 35.5
 LEU-13   ARG-14  1.6 0.9 -4.9 -19.9 37.0 38.8 53.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-66   PHE-67  8.3 8.1 3.4 -1.0 116.3 111.0 -0.9
 PHE-67   ASN-68  5.0 4.6 3.7 -13.0 164.0 155.2 22.5
 ASN-68   GLN-69  6.5 6.2 -23.8 23.5 47.4 45.5 5.6
 GLN-69   ASP-70  6.5 7.0 11.9 -15.0 96.0 100.1 11.2
 ASP-70   VAL-71  4.0 4.6 -0.4 -7.9 54.8 59.3 15.8
 VAL-71   ASP-72  1.9 1.5 10.9 -5.0 165.8 166.6 -18.6
 ASP-72   ALA-73  3.6 3.7 -6.9 2.7 71.3 61.2 17.2
 ALA-73   ALA-74  4.1 4.7 11.3 -10.0 99.8 102.5 6.5
 ALA-74   VAL-75  2.7 3.2 4.3 -5.1 149.7 147.7 -38.6
 VAL-75   ARG-76  1.2 0.9 -6.3 2.6 35.8 32.2 47.6
 ARG-76   GLY-77  2.5 2.7 -12.6 3.8 87.7 78.0 -1.0
 GLY-77   ILE-78  5.4 5.4 5.5 -5.1 117.8 116.7 12.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees