Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-88   LEU-89  8.6 8.9 -11.4 -0.2 35.7 38.9 137.2
 LEU-89   THR-90  8.3 8.5 -5.3 10.5 86.2 85.2 -90.5
 THR-90   ILE-91  7.4 7.5 -4.3 -0.6 27.9 27.8 64.9
 ILE-91   THR-92  5.4 5.3 -0.5 4.0 75.1 75.6 -73.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-103   PRO-104  3.6 3.7 -2.9 8.8 140.9 138.1 8.7
 PRO-104   PHE-105  1.3 1.3 -2.6 -5.9 140.6 139.3 -24.4
 PHE-105   MET-106  2.9 3.0 7.8 -1.0 32.8 34.0 44.7
 MET-106   THR-107  0.7 0.7 -7.2 -3.6 69.7 72.4 67.3
 THR-107   LEU-108  3.9 3.6 -5.1 -2.3 120.6 126.2 -75.1
 LEU-108   GLY-109  7.0 6.8 12.8 -12.8 113.1 114.8 41.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-209   LEU-210  16.6 16.4 -2.7 7.2 148.7 147.8 90.3
 LEU-210   ILE-211  14.7 14.5 -1.5 -1.6 138.3 137.3 -78.0
 ILE-211   ASP-212  16.7 16.7 1.6 1.0 44.0 37.1 58.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-227   ASP-228  7.8 7.5 11.3 -6.2 61.4 64.0 104.8
 ASP-228   LYS-229  9.5 9.1 16.8 -16.1 45.4 49.8 -38.6
 LYS-229   ILE-230  12.4 11.9 5.5 2.7 31.3 28.3 232.6
 ILE-230   THR-231  10.0 9.8 9.3 -9.7 63.7 58.8 -80.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-245   MET-246  8.3 8.2 4.6 -1.2 73.5 72.7 31.7
 MET-246   LYS-247  8.5 8.5 0.9 0.0 104.7 105.0 -35.1
 LYS-247   GLU-248  5.4 5.3 3.5 -2.5 166.0 166.7 -1.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees