Igg1 Fab Fragment (Hc19)

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-5   GLN-6  1.6 1.6 -2.0 -1.3 35.5 34.6 90.6
 GLN-6   GLU-7  2.3 2.2 -2.9 -0.7 105.9 105.9 -35.3
 GLU-7   SER-8  6.0 5.9 -3.1 2.7 89.6 87.7 20.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-20   LEU-21  8.8 8.8 3.0 -5.2 147.9 147.6 61.3
 LEU-21   THR-22  5.9 5.9 -0.2 2.7 67.9 68.3 -16.2
 THR-22   CYS-23  5.8 5.7 -0.2 -1.9 56.1 58.7 -25.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-34   TRP-35  7.1 7.0 -0.1 -0.1 99.4 99.9 8.9
 TRP-35   VAL-36  3.7 3.7 -2.6 3.0 59.0 59.1 14.3
 VAL-36   GLN-37  5.4 5.6 -3.0 0.1 96.6 95.9 -10.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-46   LEU-47  7.5 7.6 8.1 -5.0 57.8 54.5 178.1
 LEU-47   ILE-48  4.1 4.1 -2.5 4.0 93.0 92.5 64.5
 ILE-48   GLY-49  5.5 5.4 -3.8 5.3 59.5 59.5 -1.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-58   PRO-59  3.2 3.1 -1.5 -1.8 63.1 63.7 68.9
 PRO-59   ALA-60  1.6 1.7 -4.2 4.0 104.3 105.7 -6.7
 ALA-60   ARG-61  3.1 3.2 -2.5 2.4 134.0 134.7 -24.8
 ARG-61   PHE-62  5.3 5.3 1.1 0.0 159.7 158.0 -14.6
 ARG-61   PHE-62  5.3 5.3 1.1 0.0 159.7 158.0 -14.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-61   PHE-62  5.3 5.3 1.1 0.0 159.7 158.0 -14.6
 ARG-61   PHE-62  5.3 5.3 1.1 0.0 159.7 158.0 -14.6
 PHE-62   SER-63  3.2 3.2 2.5 -4.3 93.0 93.0 -16.6
 SER-63   GLY-64  5.5 5.5 -1.1 -5.3 14.9 14.8 195.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-70   ALA-71  9.9 9.8 0.5 -2.0 164.5 166.9 32.0
 ALA-71   ALA-72  8.1 8.1 1.5 -1.8 106.1 105.7 -3.5
 ALA-72   LEU-73  6.8 6.8 1.4 0.4 151.0 151.6 -52.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-86   PHE-87  4.6 4.6 -8.3 6.9 38.8 40.1 70.4
 PHE-87   CYS-88  4.0 4.1 -2.2 2.4 105.8 105.4 -3.8
 CYS-88   ALA-89  3.6 3.6 0.4 -2.4 121.5 119.7 75.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-99   GLY-100  3.7 3.7 -1.0 0.7 96.9 98.4 -0.9
 GLY-100   GLY-101  4.6 4.7 1.9 -1.7 139.7 140.8 6.3
 GLY-101   THR-102  4.8 4.8 -1.6 3.9 92.4 92.8 -25.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees