Protein (Ribokinase)

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-12   ILE-13  3.4 3.3 4.4 2.0 101.5 104.1 -33.5
 ILE-13   ASN-14  2.4 2.3 1.2 1.3 165.2 167.4 65.4
 ASN-14   ALA-15  2.2 2.0 2.5 -2.8 116.5 112.8 112.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-41   GLY-42  3.6 3.7 -2.6 -10.4 57.7 52.3 72.6
 GLY-42   LYS-43  1.7 1.9 -12.6 7.2 52.3 43.7 -39.5
 LYS-43   GLY-44  4.9 4.9 -10.5 -3.8 22.2 22.4 150.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-66   ASP-67  14.6 15.1 0.6 -35.2 154.3 138.1 200.1
 ASP-67   SER-68  13.9 14.5 5.5 -5.6 74.6 79.0 16.5
 SER-68   ILE-69  14.2 14.7 -4.1 12.8 115.8 101.2 70.4
 ILE-69   GLY-70  10.8 11.1 -7.0 0.7 158.5 163.4 -80.4
 GLY-70   GLU-71  10.6 10.6 6.6 14.6 49.1 51.6 168.9
 GLU-71   SER-72  13.8 13.5 -40.5 46.3 95.2 91.8 -55.4
 SER-72   VAL-73  13.2 12.9 -24.4 10.2 117.1 123.1 -95.5
 VAL-73   ARG-74  9.7 9.4 -6.8 6.0 173.3 170.5 -78.0
 ARG-74   GLN-75  10.3 10.5 -3.2 -2.9 104.6 106.7 54.9
 GLN-75   GLN-76  13.4 13.5 2.0 0.8 102.5 90.1 -1.5
 GLN-76   LEU-77  12.1 12.1 3.4 3.5 45.0 38.8 51.6
 LEU-77   ALA-78  9.3 9.3 5.6 -17.2 27.7 31.8 -102.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-96   VAL-97  6.1 5.8 -4.3 -4.7 46.8 46.7 203.5
 VAL-97   ALA-98  3.9 3.7 -5.8 2.7 80.8 78.9 -14.2
 ALA-98   LEU-99  1.9 1.8 -0.1 -3.4 24.9 25.4 -13.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-110   GLY-111  7.4 7.5 -13.3 16.3 92.1 92.9 -41.4
 GLY-111   ILE-112  7.1 6.8 6.3 -7.0 124.1 127.3 26.2
 ILE-112   HIS-113  6.2 6.1 -23.0 24.3 93.6 91.6 -2.1
 HIS-113   ALA-114  7.9 7.5 -5.9 -7.4 21.8 12.8 151.5
 ALA-114   GLY-115  8.8 8.6 3.6 -6.2 100.1 108.2 61.5
 GLY-115   ALA-116  10.1 10.1 9.8 -1.6 165.7 167.6 -105.6
 ALA-116   ASN-117  10.5 10.4 -4.8 3.7 48.3 52.9 88.3
 ASN-117   ALA-118  8.3 8.2 -0.8 -3.5 73.7 77.3 -42.5
 ALA-118   ALA-119  11.8 11.7 -3.4 -4.3 47.7 44.6 53.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-285   VAL-286  16.6 16.6 4.3 -2.8 154.0 158.6 4.5
 VAL-286   THR-287  17.8 17.8 7.6 -9.3 124.5 126.8 -15.0
 THR-287   ARG-288  20.3 20.0 -5.2 6.7 72.9 76.4 34.2
 ARG-288   LYS-289  17.7 17.3 11.3 -9.8 120.4 118.3 9.4
 LYS-289   GLY-290  15.0 14.4 -9.6 -1.7 118.6 118.1 -85.5
 GLY-290   ALA-291  11.4 10.7 11.1 5.2 37.1 28.2 135.5
 ALA-291   GLN-292  9.5 9.1 3.9 -8.2 30.5 43.2 14.0
 GLN-292   PRO-293  9.0 9.4 8.1 -2.6 87.3 94.7 45.7
 PRO-293   SER-294  12.3 12.7 2.1 -4.5 79.0 79.5 -43.5
 SER-294   VAL-295  14.1 14.1 6.7 -17.0 17.8 17.7 5.9
 VAL-295   PRO-296  13.5 13.5 -5.6 7.2 118.9 123.3 9.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees