Lysine-Specific Histone Demethylase 1
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLU-420
LYS-421
4.7
4.8
-6.7
6.2
88.4
92.1
54.5
LYS-421
HIS-422
5.0
5.4
0.7
-3.3
36.0
35.4
-12.9
HIS-422
VAL-423
3.9
4.3
3.5
3.8
93.4
94.5
-2.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLU-506
LYS-507
23.2
23.1
20.1
-7.5
82.0
91.8
-45.2
LYS-507
LEU-508
20.0
20.2
21.2
-26.2
24.8
26.7
-69.0
LEU-508
GLN-509
20.0
19.8
30.0
-20.8
85.7
80.9
56.2
GLN-509
GLU-510
20.5
20.4
11.8
-10.4
58.9
59.1
-34.0
GLN-509
GLU-510
20.5
20.4
11.8
-10.4
58.9
59.1
-34.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLN-509
GLU-510
20.5
20.4
11.8
-10.4
58.9
59.1
-34.0
GLN-509
GLU-510
20.5
20.4
11.8
-10.4
58.9
59.1
-34.0
GLU-510
LEU-511
17.9
17.5
18.6
-37.5
123.4
121.5
177.8
LEU-511
GLU-512
15.2
15.0
8.8
29.4
140.7
144.4
-319.9
GLU-512
ALA-513
15.8
16.2
-58.4
42.9
101.3
102.5
66.7
ALA-513
ASN-514
16.4
16.1
-2.2
12.5
63.2
70.7
-150.2
ALA-513
ASN-514
16.4
16.1
-2.2
12.5
63.2
70.7
-150.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ALA-513
ASN-514
16.4
16.1
-2.2
12.5
63.2
70.7
-150.2
ALA-513
ASN-514
16.4
16.1
-2.2
12.5
63.2
70.7
-150.2
ASN-514
PRO-515
12.9
12.5
11.0
-5.1
56.7
51.5
28.9
PRO-515
PRO-516
10.6
10.2
2.6
-0.8
104.2
107.1
65.2
PRO-516
SER-517
7.0
6.5
5.3
-11.5
41.9
47.3
-98.9
SER-517
ASP-518
6.5
5.8
-1.8
5.8
154.3
164.8
98.9
ASP-518
VAL-519
6.4
6.3
-8.3
6.6
112.1
116.4
13.3
VAL-519
TYR-520
5.3
5.3
2.8
-7.5
136.9
137.1
24.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees