Damage-Specific DNA Binding Protein 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-392   GLY-393  1.1 0.6 22.0 -55.1 166.7 156.1 20.2
 GLY-393   ILE-394  1.0 0.7 0.8 -24.2 131.8 135.7 38.5
 ILE-394   GLY-395  0.7 0.9 -34.0 34.6 61.8 66.3 1.7
 GLY-395   ILE-396  3.1 3.2 -36.6 17.2 11.5 2.9 31.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-703   ILE-704  4.0 4.4 -14.5 -47.8 14.7 19.7 87.7
 ILE-704   ASP-705  3.0 3.0 -19.6 35.1 53.4 54.7 -25.3
 ASP-705   GLU-706  5.1 5.3 -161.5 -117.4 56.0 80.0 -42.1
 GLU-706   ILE-707  5.2 7.7 -119.8 28.7 46.0 49.6 131.4
 ILE-707   GLN-708  6.5 7.3 91.4 -22.5 132.4 124.7 -62.9
 GLN-708   LYS-709  4.0 4.8 34.6 -47.1 113.4 120.8 26.0
 LYS-709   LEU-710  4.3 4.9 13.8 0.8 115.2 111.7 -5.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees