Periplasmic Oligopeptide-Binding Protein
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PRO-43
GLN-44
6.8
6.7
7.1
-1.4
109.9
111.6
-224.0
GLN-44
SER-45
9.7
9.6
-5.1
0.9
53.3
58.2
168.6
SER-45
PHE-46
9.6
9.5
-3.6
0.6
74.8
76.1
-168.6
PHE-46
ASP-47
8.2
8.2
-3.1
-0.3
5.0
4.0
282.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLY-53
VAL-54
6.1
6.0
1.5
3.4
95.6
95.9
9.5
VAL-54
PRO-55
3.8
3.7
-1.2
2.9
68.1
69.5
18.5
PRO-55
GLU-56
1.8
1.8
-3.5
2.1
140.1
139.8
7.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-63
LEU-64
9.4
9.6
-6.9
6.2
6.4
9.0
17.4
LEU-64
GLU-65
7.9
8.1
-2.9
5.7
79.5
81.2
73.0
GLU-65
GLY-66
7.9
8.1
3.2
-8.4
158.1
156.5
176.3
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-67
VAL-68
7.8
7.9
-10.8
12.3
65.4
64.4
-15.5
VAL-68
THR-69
10.1
10.1
-2.4
-4.6
12.7
13.4
183.6
THR-69
SER-70
10.6
10.6
-0.9
-2.1
67.5
64.9
94.5
SER-70
ASP-71
13.0
13.0
-2.9
4.3
44.2
45.3
-125.3
ASP-71
SER-72
15.7
15.8
-0.6
-0.6
29.5
30.6
-33.8
SER-72
GLU-73
16.0
16.1
-10.3
15.7
87.5
85.4
47.9
GLU-73
GLY-74
17.4
17.5
-6.9
-11.2
136.7
131.1
-226.4
GLY-74
LYS-75
15.0
14.9
13.4
-5.7
19.8
24.1
201.6
LYS-75
LEU-76
17.0
17.1
1.1
2.5
54.7
54.7
171.1
LEU-76
GLN-77
15.1
15.1
3.5
-2.6
71.3
72.5
-216.3
GLN-77
PRO-78
15.7
15.6
-3.8
4.8
120.3
122.9
-93.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-100
ALA-101
19.5
19.5
-2.6
0.9
32.2
34.8
65.9
ALA-101
LYS-102
16.9
16.8
-1.2
2.8
87.0
88.9
72.4
LYS-102
TRP-103
17.1
17.0
10.6
-10.2
139.4
137.9
-63.4
TRP-103
SER-104
15.5
15.6
-5.0
-2.3
47.7
50.5
81.2
SER-104
ASN-105
17.2
17.4
7.8
-10.9
82.3
79.9
8.9
ASN-105
GLY-106
19.7
19.8
1.8
6.8
37.8
38.0
258.7
GLY-106
ASP-107
20.4
20.6
-13.6
8.5
155.4
150.8
-227.5
ASP-107
PRO-108
18.4
18.3
-0.6
-8.3
106.7
103.2
-69.9
PRO-108
VAL-109
16.5
16.5
4.7
-5.3
101.8
96.6
-61.7
VAL-109
THR-110
13.0
13.0
4.4
-5.7
25.1
25.5
-101.9
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
TYR-130
ALA-131
9.2
9.2
11.6
-8.9
7.5
6.5
101.6
ALA-131
SER-132
10.4
10.4
1.1
4.9
62.2
63.6
83.8
SER-132
TYR-133
11.8
11.8
-7.2
2.8
96.4
98.4
49.0
TYR-133
LEU-134
9.0
8.9
-2.2
-1.7
156.4
161.1
-133.0
LEU-134
SER-135
8.0
8.0
4.3
-3.9
58.1
58.9
69.6
SER-135
TYR-136
11.7
11.7
1.7
-3.6
107.6
104.4
-159.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-186
PRO-187
2.8
2.9
-1.4
3.5
132.4
131.1
70.0
PRO-187
LEU-188
5.4
5.6
-8.2
6.7
57.9
57.4
37.4
LEU-188
PRO-189
8.5
8.4
-3.9
4.4
124.4
126.5
-78.2
PRO-189
GLN-190
12.0
12.0
2.6
-3.2
62.0
57.8
184.1
GLN-190
LYS-191
12.6
12.4
5.3
-12.5
88.6
90.6
-138.7
LYS-191
VAL-192
16.3
16.1
16.0
-11.6
147.3
145.2
-173.2
VAL-192
VAL-193
16.8
16.7
4.0
-8.0
98.9
97.7
156.9
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
TYR-387
ASN-388
15.4
15.5
-0.6
-3.5
99.4
98.7
-53.1
ASN-388
THR-389
12.1
12.1
3.3
-5.4
23.2
23.7
-5.2
THR-389
ASN-390
10.9
10.8
-2.5
9.6
95.7
94.2
-19.8
ASN-390
GLU-391
8.9
9.0
1.4
5.1
50.6
47.3
13.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASN-418
GLN-419
16.1
16.0
-2.7
4.0
63.2
64.4
-4.0
GLN-419
GLU-420
15.2
15.1
-7.0
10.5
78.2
79.5
-69.7
GLU-420
TRP-421
12.4
12.2
-0.2
-2.5
22.3
21.5
-26.0
TRP-421
LYS-422
10.2
10.2
2.7
-4.4
142.8
141.3
100.6
LYS-422
THR-423
12.1
11.9
1.2
2.8
91.7
94.3
-108.5
THR-423
TYR-424
15.4
15.3
-6.2
6.1
79.9
78.1
-9.0
TYR-424
ILE-425
14.9
14.7
0.1
-1.8
165.9
165.7
40.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees