Glutamate Receptor Delta-2 Subunit

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-104   TYR-105  5.8 5.3 -5.1 29.5 61.3 68.9 -60.3
 TYR-105   SER-106  3.5 3.7 9.9 -12.2 116.8 144.8 27.9
 SER-106   VAL-107  5.7 5.0 -9.8 -23.7 59.6 70.6 116.6
 VAL-107   GLY-108  7.5 6.9 7.1 -20.5 164.4 169.0 60.5
 GLY-108   VAL-109  7.1 7.0 1.1 -5.0 122.6 115.9 22.1
 VAL-109   LEU-110  8.7 8.5 4.5 -0.9 143.8 144.7 -17.7
 LEU-110   LEU-111  7.6 7.5 2.3 -7.0 136.8 138.0 -0.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-209   PHE-210  5.8 6.6 2.8 3.6 134.9 134.0 -27.4
 PHE-210   TYR-211  4.7 5.2 -7.5 18.3 85.0 90.8 -4.1
 TYR-211   THR-212  3.9 4.1 1.3 -23.7 149.7 159.0 134.5
 THR-212   VAL-213  5.1 4.6 -22.4 17.5 81.5 74.4 23.2
 THR-216   VAL-217  10.7 8.3 -35.6 170.6 14.1 41.2 -731.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees