Hypothetical Transcriptional Regulator In Qaca 5'Region

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  GLU-58   SER-59  1.8 2.3 18.4 -6.1 22.6 28.6 29.6  SER-59   LYS-60  4.4 5.0 0.5 -3.8 53.3 44.3 -1.3  LYS-60   TRP-61  5.2 4.6 -29.3 45.8 114.6 110.1 14.5  TRP-61   GLN-62  2.3 1.1 5.5 -16.1 53.5 51.0 -29.3  GLN-62   GLU-63  1.5 2.7 -12.8 16.8 155.6 151.0 12.0  GLU-63   GLN-64  2.8 3.6 -5.2 17.5 122.9 120.8 29.0  GLN-64   TRP-65  3.1 1.9 -26.8 20.5 111.7 116.7 -8.7 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  LEU-87   THR-88  13.5 12.9 -17.6 17.5 68.3 79.7 0.5  THR-88   THR-89  12.9 13.1 -22.9 -1.9 103.4 110.4 -43.0  THR-89   GLU-90  9.6 10.1 162.8 53.7 44.3 10.3 -340.2  GLU-90   TYR-91  10.1 10.7 -36.5 70.2 125.5 102.4 5.0  TYR-91   TYR-92  6.6 14.3 -167.7 168.1 119.6 99.6 36.4  TYR-92   TYR-93  4.8 13.7 81.3 -15.1 72.9 75.9 150.7  TYR-93   PRO-94  7.8 10.4 162.7 -19.0 58.8 35.2 314.1  PRO-94   LEU-95  10.3 11.8 24.5 8.5 10.0 34.3 86.9 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  ASN-110   SER-111  9.4 9.4 17.3 -1.5 43.3 58.5 41.9  SER-111   ILE-112  8.9 8.9 -17.5 7.8 128.0 148.2 -25.4  ILE-112   ASN-113  5.3 5.9 24.9 -30.5 60.9 58.7 1.5  ASN-113   GLU-114  6.6 7.7 63.5 -41.1 25.9 51.1 55.9  GLU-114   LYS-115  9.1 10.3 -17.4 -2.4 135.0 148.2 -39.6 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees