Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-37   GLY-38  6.3 6.0 -4.1 7.9 100.7 98.8 52.8
 TYR-37   GLY-38  6.3 6.0 -4.1 7.9 100.7 98.8 52.8
 GLY-38   ASP-39  3.3 2.7 -0.5 7.6 125.8 118.3 26.2
 ASP-39   PHE-40  3.4 3.5 -2.4 -4.3 56.1 44.0 25.8
 PHE-40   MET-41  5.5 5.1 0.4 -1.0 123.0 119.2 -13.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-66   LYS-67  2.7 2.8 0.5 -7.4 91.9 95.7 28.4
 LYS-67   LEU-68  4.4 3.8 5.1 2.2 137.9 141.4 -39.0
 LEU-68   GLN-69  3.3 2.8 -12.5 16.2 98.0 98.9 22.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees