M-Calpain

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-220   VAL-221  5.4 4.5 -5.2 -26.7 21.8 32.5 106.4
 VAL-221   THR-222  6.3 5.6 -4.6 5.8 53.6 48.0 0.1
 THR-222   GLU-223  4.5 3.7 -30.8 43.3 19.8 19.6 -49.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-343   GLU-344  10.8 13.2 -132.6 146.4 71.4 44.2 -38.5
 GLU-344   PHE-345  13.0 11.2 153.7 -5.8 125.8 59.8 29.5
 PHE-345   THR-346  10.7 9.1 -161.9 -49.7 115.2 57.1 -48.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees