Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-107   SER-108  7.0 7.0 5.8 -11.2 53.6 52.8 -8.9
 SER-108   LEU-109  4.0 3.9 -13.5 4.5 56.0 54.5 32.9
 LEU-109   GLY-110  0.3 0.4 8.0 16.0 50.4 55.0 69.2
 GLY-110   ILE-111  3.3 3.4 -7.7 -1.2 55.9 54.3 15.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-215   ASP-216  8.8 9.0 0.2 0.3 142.1 145.1 4.8
 ASP-216   SER-217  5.7 5.9 -0.4 -5.5 108.0 107.8 -1.2
 SER-217   LYS-218  2.0 2.3 -0.3 -22.8 78.6 66.8 41.0
 LYS-218   GLY-219  2.0 1.8 13.2 8.8 62.6 49.9 45.4
 GLY-219   TYR-220  4.7 4.7 18.6 -3.5 77.9 79.2 2.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-255   TYR-256  4.8 4.9 -7.7 -2.9 46.8 45.7 32.1
 TYR-256   ASP-257  6.5 6.1 11.4 9.3 145.0 143.4 -65.7
 ASP-257   LYS-258  9.0 8.8 1.7 -29.0 130.0 149.3 110.3
 LYS-258   GLY-259  6.7 6.5 10.0 8.6 94.2 87.0 -8.5
 GLY-259   GLU-260  3.7 3.2 -8.5 4.2 17.3 20.6 17.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees