D-Ribose-Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  HIS-100   ILE-101  5.1 5.2 11.8 -9.2 32.1 29.6 -0.1  ILE-101   ALA-102  5.8 5.9 13.3 1.7 47.3 45.6 23.4  ALA-102   SER-103  3.2 3.4 -9.8 27.8 123.9 133.5 17.5  SER-103   ASP-104  0.5 1.9 -37.8 11.5 64.3 67.2 23.7  ASP-104   ASN-105  3.2 3.8 15.9 1.6 58.9 58.6 23.2  ASN-105   VAL-106  5.1 4.8 0.2 -2.9 88.1 83.9 -5.7 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  THR-232   ILE-233  4.9 4.7 12.0 -24.3 52.4 55.3 4.0  ILE-233   ALA-234  3.1 2.9 17.6 -41.3 74.4 68.6 -10.6  ALA-234   GLN-235  1.6 1.1 18.8 36.2 21.2 39.0 86.3  GLN-235   LEU-236  3.2 2.8 -12.9 1.8 81.9 71.9 -1.9 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  PRO-262   VAL-263  5.1 6.2 -11.9 10.4 145.9 140.5 -3.1  VAL-263   ASP-264  5.2 6.2 4.7 0.6 47.0 37.1 5.9  ASP-264   LEU-265  5.4 6.6 7.5 -18.0 52.1 56.2 -15.7  LEU-265   LYS-266  3.1 3.9 -3.7 40.0 150.1 154.6 55.4  LYS-266   LEU-267  3.7 4.5 29.0 -9.1 50.3 55.9 25.9  LEU-267   VAL-268  4.2 4.5 10.2 -5.0 31.3 42.4 2.1 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees