Benzoylformate Decarboxylase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-453   ASN-454  2.6 2.6 -2.6 4.8 40.6 42.7 -9.9
 ASN-454   ASN-455  3.8 3.9 -2.4 2.7 67.6 67.4 7.2
 ASN-455   GLY-456  6.3 6.3 2.0 -0.8 147.9 147.0 -1.4
 GLY-456   THR-457  6.1 6.2 1.4 -2.3 153.6 154.8 10.5
 THR-457   TYR-458  4.5 4.6 -5.0 5.5 92.5 90.8 47.7
 TYR-458   GLY-459  3.1 3.0 0.8 -1.7 92.4 92.5 73.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-476   ASP-477  3.3 3.4 2.9 -2.3 149.4 150.0 -7.4
 ASP-477   VAL-478  5.3 5.4 1.9 -1.5 108.7 107.9 1.1
 VAL-478   PRO-479  5.3 5.4 1.5 -5.1 134.8 135.6 20.3
 PRO-479   GLY-480  8.6 8.7 -1.0 2.3 70.8 72.3 -23.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees