Glycerol Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-262   LYS-263  5.3 5.5 -15.8 -12.8 31.6 25.4 95.7
 LYS-263   ASN-264  3.3 3.2 32.1 -3.8 76.2 74.4 73.9
 ASN-264   THR-265  1.0 1.2 21.3 -16.3 139.0 137.9 -30.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-270   PHE-271  7.6 7.6 -8.8 -17.1 41.5 43.3 106.9
 PHE-271   LEU-272  5.8 5.5 -29.3 38.3 97.1 93.9 -5.2
 LEU-272   LEU-273  2.3 2.0 2.3 -13.8 129.9 131.9 34.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-304   GLU-305  4.3 4.3 -6.5 1.2 42.5 44.9 30.9
 GLU-305   GLY-306  4.2 4.0 0.8 19.5 73.5 84.8 18.6
 GLY-306   SER-307  4.1 3.8 -41.4 22.9 42.0 54.4 65.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-346   VAL-347  20.4 21.1 10.1 -23.6 145.9 135.4 10.0
 VAL-347   PRO-348  19.4 19.6 16.5 -12.5 84.2 89.0 -44.0
 PRO-348   ALA-349  17.8 18.3 -103.7 -33.3 30.4 40.5 450.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-357   TRP-358  14.5 11.8 -9.1 -13.8 79.6 125.0 -19.0
 TRP-358   ARG-359  11.7 12.5 44.4 -11.7 92.7 69.2 57.9
 ARG-359   PRO-360  14.5 16.3 17.8 -27.9 153.8 120.7 23.4
 PRO-360   ASP-361  15.2 18.8 -137.1 15.9 92.1 91.1 19.0
 ASP-361   ALA-362  18.9 21.6 -164.9 15.5 18.0 48.0 613.4
 ALA-362   ARG-363  20.9 20.8 162.5 -45.6 115.4 140.5 -291.5
 ARG-363   GLY-364  22.9 22.9 20.9 68.7 108.7 138.9 -230.0
 GLY-364   ALA-365  22.0 22.5 -42.0 8.4 76.3 91.6 19.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-436   VAL-437  6.4 5.0 -2.5 -23.7 91.0 84.0 35.8
 VAL-437   ALA-438  7.8 6.6 -1.8 -16.5 44.7 24.5 57.4
 ALA-438   GLU-439  6.5 5.9 20.2 14.8 130.6 113.4 -131.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-466   ALA-467  13.8 11.1 -21.1 -19.5 53.7 56.2 132.8
 ALA-467   GLU-468  11.4 9.6 -6.3 11.7 105.6 99.4 2.8
 GLU-468   ASP-469  8.5 7.4 -46.8 24.1 35.5 37.7 79.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-497   TRP-498  23.5 22.3 87.6 -14.9 80.2 72.5 60.3
 TRP-498   VAL-499  26.5 25.3 11.1 -22.6 96.9 109.4 67.2
 VAL-499   ASP-500  24.8 25.8 174.1 -17.3 160.2 167.1 -640.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees