Trap-T Family Sorbitol/mannitol Transporter, Periplasmic Binding Protein, Smom

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-155   GLN-156  7.8 8.2 -3.7 7.6 63.6 67.5 7.6
 GLY-158   GLY-159  2.4 2.3 14.8 -17.3 97.4 92.9 -5.1
 GLY-159   TRP-160  5.8 5.9 -1.3 -6.1 66.6 66.3 38.0
 TRP-160   PHE-161  8.4 8.6 -1.0 -7.6 127.4 126.8 -43.7
 PHE-161   ARG-162  10.9 11.1 15.6 -10.1 116.2 120.2 13.2
 ARG-162   ARG-163  14.6 14.6 12.3 -13.9 72.4 80.7 -39.7
 ARG-163   GLU-164  14.8 14.6 17.0 7.1 66.2 63.6 69.9
 ARG-163   GLU-164  14.8 14.6 17.0 7.1 66.2 63.6 69.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-163   GLU-164  14.8 14.6 17.0 7.1 66.2 63.6 69.9
 ARG-163   GLU-164  14.8 14.6 17.0 7.1 66.2 63.6 69.9
 GLU-164   ILE-165  12.8 12.8 -7.7 5.9 175.9 166.7 -7.5
 ILE-165   ASN-166  11.3 11.0 -24.7 16.1 101.6 106.1 29.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-177   VAL-178  13.5 13.7 19.2 19.8 96.6 95.4 -41.7
 VAL-178   GLY-179  11.7 11.6 -12.1 62.2 46.2 82.3 -144.6
 GLY-179   GLY-180  13.3 13.0 -64.3 20.0 69.2 31.3 256.5
 GLY-180   PHE-181  13.6 14.5 -3.9 -15.0 48.0 22.5 127.2
 PHE-181   ALA-182  11.1 13.3 32.9 1.1 82.1 96.6 -67.6
 ALA-182   GLY-183  8.2 9.8 14.7 13.7 115.6 111.1 -64.0
 GLY-183   LYS-184  10.3 11.7 -3.6 -3.8 176.4 168.6 -51.9
 GLY-183   LYS-184  10.3 11.7 -3.6 -3.8 176.4 168.6 -51.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-183   LYS-184  10.3 11.7 -3.6 -3.8 176.4 168.6 -51.9
 GLY-183   LYS-184  10.3 11.7 -3.6 -3.8 176.4 168.6 -51.9
 LYS-184   VAL-185  10.4 11.4 6.4 -2.3 69.5 77.2 29.4
 GLU-187   ARG-188  9.8 10.4 3.0 -2.2 29.0 43.3 -1.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-233   TYR-234  6.0 5.9 5.1 -3.3 128.8 124.4 16.2
 TYR-234   TYR-235  4.4 4.2 7.9 -1.7 86.1 84.1 13.4
 TYR-235   PRO-236  2.2 2.1 -3.3 0.0 39.0 39.4 21.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-286   ALA-287  3.4 3.1 1.1 -1.0 67.0 66.6 -5.0
 ALA-287   ILE-288  1.6 2.0 6.4 0.4 59.2 53.7 29.8
 ILE-288   LYS-289  1.6 0.9 -0.1 -3.3 53.4 55.9 12.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-298   ARG-299  7.4 7.1 -3.1 -0.6 32.9 37.3 27.2
 ARG-299   PRO-300  8.2 7.9 4.3 -2.4 129.7 128.8 -7.9
 PRO-300   PHE-301  7.1 6.9 -1.2 -0.4 31.0 28.4 3.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees