Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-30   THR-31  3.8 4.1 -34.4 -5.6 53.2 53.6 55.3
 SER-30   THR-31  3.8 4.1 -34.4 -5.6 53.2 53.6 55.3
 THR-31   GLY-32  1.8 2.1 3.9 3.7 73.9 87.8 1.8
 GLY-32   ASP-33  3.4 4.5 -7.4 7.5 131.4 137.1 -3.7
 ASP-33   MET-34  1.7 3.4 8.1 -4.5 114.2 106.0 14.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-59   THR-60  4.6 4.3 23.9 20.4 53.9 56.9 66.4
 THR-60   ASP-61  2.0 1.7 -12.3 -6.1 65.1 68.2 16.1
 ASP-61   GLU-62  1.8 2.2 -0.9 -1.7 86.1 78.4 4.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees