Glutamate Receptor Ionotropic, Nmda 2A

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-134   GLY-135  4.4 4.7 4.9 6.9 24.5 29.0 59.0
 GLY-135   ILE-136  1.8 2.0 16.1 -24.3 101.3 106.0 -0.4
 ILE-136   SER-137  2.0 1.9 18.7 -12.7 111.4 111.2 43.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-232   THR-233  10.9 10.3 15.8 3.3 149.2 154.8 -115.1
 THR-233   ILE-234  8.7 8.6 -17.3 -1.3 53.0 54.8 -15.4
 ILE-234   GLY-235  10.2 10.8 -28.4 145.5 96.5 70.5 -78.6
 GLY-235   SER-236  11.1 12.1 -124.3 115.6 55.7 136.2 20.2
 SER-236   GLY-237  9.3 11.6 59.7 168.9 167.4 95.4 663.5
 GLY-237   TYR-238  11.2 8.0 42.9 48.7 124.9 157.1 -532.2
 TYR-238   ILE-239  9.4 8.1 129.0 -45.1 87.4 103.1 -67.1
 ILE-239   PHE-240  5.8 4.9 -13.2 0.0 19.6 6.0 83.7
 PHE-240   ALA-241  3.8 3.7 16.0 -5.4 90.9 102.8 22.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees