D-Lactate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-101   TYR-102  8.6 8.5 14.6 -26.0 96.7 93.5 4.3
 TYR-102   SER-103  4.9 4.8 18.0 -16.2 72.9 66.8 55.9
 SER-103   PRO-104  5.7 5.9 -4.7 6.5 134.0 133.8 28.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-309   VAL-310  4.9 4.9 8.9 -4.8 57.1 59.5 29.4
 VAL-310   VAL-311  6.6 6.7 9.0 -15.4 9.4 6.8 -123.3
 VAL-311   LYS-312  5.1 5.1 12.9 -1.6 67.6 65.0 182.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees