Groel

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-187   ASP-188  3.4 3.5 -2.5 -0.8 86.7 87.6 6.0
 ASP-188   VAL-189  3.6 3.7 8.5 -6.0 47.9 45.4 40.6
 VAL-189   VAL-190  4.4 4.5 1.5 3.3 58.9 58.2 52.9
 VAL-190   GLU-191  6.6 6.6 4.3 -5.0 56.3 57.2 1.6
 GLU-191   GLY-192  9.0 9.0 -6.8 8.0 144.8 146.0 13.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-375   VAL-376  8.0 8.0 1.2 -2.2 103.2 104.6 19.8
 VAL-376   ALA-377  4.3 4.3 -4.2 4.9 134.1 134.1 18.5
 ALA-377   VAL-378  1.9 1.9 3.4 -6.5 119.5 117.1 39.6
 VAL-378   ILE-379  1.7 1.8 4.3 -5.2 50.5 49.0 9.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees