Rna-Dependent Rna-Polymerase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-19   LYS-20  2.2 3.0 -10.9 5.9 115.7 118.9 3.7
 LYS-20   LEU-21  4.9 5.3 3.6 1.1 49.2 53.2 49.9
 LEU-21   PRO-22  7.2 7.6 -21.5 12.1 65.0 64.2 12.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-32   HIS-33  14.2 14.3 10.2 -11.1 43.7 42.3 -36.5
 HIS-33   HIS-34  12.6 12.7 12.6 1.2 64.2 65.5 113.7
 HIS-34   ASN-35  10.2 10.4 -14.8 10.8 131.8 122.7 -77.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-144   PHE-145  2.0 2.1 12.2 -4.3 53.6 50.6 118.3
 PHE-145   CYS-146  2.4 2.1 -5.8 10.5 81.6 78.3 -17.6
 CYS-146   VAL-147  5.3 5.0 1.1 8.7 115.9 120.2 -84.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-155   PRO-156  9.1 8.6 -18.4 0.2 128.7 136.9 -142.9
 PRO-156   ALA-157  9.5 9.1 5.1 -3.2 118.4 118.5 -29.6
 ALA-157   ARG-158  9.2 9.0 5.8 -4.9 108.2 109.5 30.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-374   ASP-375  4.5 4.7 3.9 -13.0 84.9 87.7 12.1
 ASP-375   ALA-376  3.0 3.3 -3.7 14.1 127.8 132.0 66.8
 ALA-376   SER-377  5.9 6.0 -25.4 22.8 145.8 141.8 -19.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-382   TYR-383  5.9 5.9 4.1 -4.5 49.6 50.1 7.8
 TYR-383   LEU-384  4.7 4.7 -2.3 -0.4 152.8 150.4 32.9
 LEU-384   THR-385  5.7 5.8 5.7 -11.1 51.5 51.9 -81.5
 THR-385   ARG-386  4.2 4.2 -5.3 5.5 31.7 33.6 -29.6
 THR-385   ARG-386  4.2 4.2 -5.3 5.5 31.7 33.6 -29.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-385   ARG-386  4.2 4.2 -5.3 5.5 31.7 33.6 -29.6
 THR-385   ARG-386  4.2 4.2 -5.3 5.5 31.7 33.6 -29.6
 ARG-386   ASP-387  5.3 5.2 -1.8 2.4 63.6 60.9 20.4
 ASP-387   PRO-388  6.2 6.1 -0.4 -2.0 67.3 66.2 10.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees