Genome Polyprotein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-7   HIS-8  28.0 28.1 15.2 6.5 160.4 143.2 -449.2
 HIS-8   VAL-9  30.2 30.4 1.6 1.0 84.1 81.8 240.4
 VAL-9   LYS-10  30.8 30.9 8.4 -3.7 79.9 78.5 -36.7
 LYS-10   ASP-11  34.6 34.6 -12.3 6.0 163.1 167.6 -122.0
 ASP-11   VAL-12  34.5 34.4 7.4 11.3 50.8 57.6 215.3
 VAL-12   GLY-13  33.1 32.7 -42.7 24.0 65.5 73.1 -45.4
 GLY-13   LEU-14  35.3 34.9 0.0 2.2 131.2 130.2 -29.4
 LEU-14   PRO-15  32.9 32.4 1.1 9.4 155.2 158.4 -268.4
 PRO-15   SER-16  33.1 32.6 -3.3 -20.3 69.1 71.1 115.5
 SER-16   ILE-17  30.6 30.4 -15.3 15.6 65.7 51.4 79.3
 ILE-17   HIS-18  28.1 27.7 6.6 1.9 150.5 145.9 -166.5
 HIS-18   THR-19  27.4 27.1 14.9 -12.6 103.8 105.7 81.3
 THR-19   PRO-20  23.9 23.4 -2.5 -8.1 22.0 24.9 150.7
 PRO-20   THR-21  22.2 21.9 0.3 14.2 93.7 90.3 53.4
 THR-21   LYS-22  21.4 21.4 0.4 -12.8 145.1 137.6 157.4
 LYS-22   THR-23  19.8 19.4 1.0 8.7 91.9 96.7 -76.0
 THR-23   LYS-24  16.5 16.2 -0.2 -9.6 46.2 41.9 156.0
 LYS-24   LEU-25  16.9 16.7 -1.1 2.3 59.6 57.7 -66.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-52   ASP-53  19.3 19.5 8.7 -1.9 102.6 91.3 -105.1
 ASP-53   PHE-54  21.0 20.9 13.7 6.1 101.0 99.3 -171.6
 PHE-54   ASP-55  19.0 18.8 -15.8 9.4 26.8 21.8 134.8
 ASP-55   SER-56  19.8 20.0 10.0 6.2 133.8 134.5 -201.7
 SER-56   ALA-57  18.7 19.2 -28.4 -0.5 101.2 84.2 69.0
 ALA-57   LEU-58  15.5 15.5 6.1 13.9 105.2 99.0 -69.9
 LEU-58   PHE-59  14.7 15.2 -11.9 -10.0 7.5 13.8 470.6
 PHE-59   SER-60  15.7 16.0 45.2 -36.1 118.1 122.2 -86.4
 SER-60   LYS-61  13.5 14.0 5.3 -8.5 110.6 118.4 104.2
 LYS-61   TYR-62  10.7 10.8 15.7 16.1 173.4 171.4 -611.0
 TYR-62   LYS-63  12.3 12.5 -20.3 64.1 69.0 60.4 -503.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-390   PHE-391  16.2 15.9 21.2 -13.3 85.9 83.3 66.4
 PHE-391   PRO-392  12.8 12.4 4.7 4.4 124.1 125.8 -95.3
 PRO-392   VAL-393  10.2 9.9 -14.9 10.9 22.3 19.9 140.3
 VAL-393   GLU-394  9.8 9.9 8.9 -1.0 102.6 101.9 2.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees