Trigger Factor

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-108   PHE-109  16.1 16.0 -1.6 -2.2 112.5 109.7 -42.9
 PHE-109   GLU-110  13.4 13.2 -3.8 10.3 101.7 107.9 -1.9
 GLU-110   VAL-111  13.5 12.9 -9.2 4.5 55.5 51.1 41.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-332   PRO-333  5.6 6.3 -9.0 0.5 111.7 111.8 -69.4
 PRO-333   ARG-334  9.1 9.4 -5.5 12.9 48.9 46.7 -20.7
 ARG-334   GLU-335  11.7 12.0 -0.4 5.3 59.9 66.0 -12.2
 GLU-335   LEU-336  14.3 14.7 -8.6 3.9 35.5 35.6 19.5
 LEU-336   PHE-337  12.2 12.7 -9.9 19.4 35.8 30.3 -74.0
 PHE-337   GLU-338  12.8 13.0 -11.9 3.1 92.4 88.7 6.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees