Heparin Cofactor II

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-425   VAL-426  15.5 16.0 7.6 -13.6 79.9 79.3 1.0
 VAL-426   ASN-427  12.2 12.9 -5.6 -4.6 169.6 167.1 -22.3
 ASN-427   GLU-428  12.6 13.5 -6.7 -8.7 97.4 94.7 0.0
 GLU-428   GLU-429  12.2 13.4 19.5 28.0 123.7 114.2 -42.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-447   VAL-448  14.3 11.3 -167.5 68.4 95.5 149.9 -125.2
 VAL-448   ARG-449  11.1 10.5 -59.5 9.2 76.7 95.4 0.9
 ARG-449   PHE-450  7.4 6.8 4.5 30.3 57.7 43.8 40.0
 PHE-450   THR-451  5.0 4.4 -15.6 1.8 71.3 64.8 1.6
 THR-451   VAL-452  3.2 2.2 -10.3 -7.7 129.9 124.2 -20.6
 VAL-452   ASP-453  3.8 2.8 -11.4 -5.0 54.2 51.0 21.7
 ASP-453   ARG-454  7.0 5.7 2.5 10.4 64.6 72.7 9.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees