Sugar Abc Transporter, Periplasmic Sugar-Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-115   SER-116  1.2 1.3 2.3 -3.7 54.3 51.4 13.7
 SER-116   GLU-117  2.5 2.4 25.9 -69.9 112.5 115.6 114.9
 GLU-117   LEU-118  5.9 5.8 24.6 -8.9 73.8 52.0 8.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-294   GLY-295  7.4 8.3 -14.1 -1.0 62.0 67.0 64.2
 GLY-295   GLY-296  5.4 5.1 15.2 15.1 51.5 44.2 134.3
 GLY-296   SER-297  3.9 3.2 -12.8 3.3 59.4 63.1 18.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-338   SER-339  9.6 9.7 -12.1 -1.0 29.7 18.7 59.0
 SER-339   ALA-340  11.7 11.5 -5.0 5.3 36.9 42.0 -7.2
 ALA-340   TRP-341  8.5 8.2 3.8 0.2 110.7 106.2 -19.3
 TRP-341   SER-342  8.8 8.3 1.1 -2.6 143.1 147.9 12.0
 SER-342   ASP-343  11.4 10.7 -7.7 7.9 32.8 33.0 -9.3
 ASP-343   PRO-344  8.8 7.9 0.2 -8.7 128.7 115.3 30.0
 PRO-344   SER-345  8.5 7.8 1.9 5.1 84.0 81.2 4.2
 SER-345   PHE-346  5.1 4.4 -0.3 -3.6 127.5 138.0 -18.4
 PHE-346   GLN-347  7.5 6.6 -7.9 8.8 64.1 73.4 24.4
 GLN-347   GLN-348  10.9 10.2 -8.3 -5.4 31.3 43.1 37.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-365   PRO-366  7.1 7.2 -0.3 -6.6 64.5 67.0 -1.3
 PRO-366   SER-367  5.3 5.0 4.8 2.7 85.7 85.6 -0.1
 SER-367   LEU-368  1.5 1.2 24.8 -30.9 149.5 154.2 22.7
 LEU-368   ALA-369  1.9 2.1 5.9 2.3 87.3 92.4 43.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees