Poly(a) RNA Polymerase Protein Cid1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-56   ILE-57  10.7 10.7 2.6 -20.5 134.5 138.7 36.1
 ILE-57   SER-58  7.4 7.5 13.2 -4.4 106.4 93.3 13.8
 SER-58   ASP-59  7.8 7.8 10.8 -3.2 79.9 76.1 11.3
 ASP-59   LYS-60  7.5 6.9 -4.6 6.8 45.0 44.8 2.6
 LYS-60   GLU-61  5.9 5.6 -4.5 3.3 100.1 95.2 10.9
 GLU-61   PHE-62  2.9 3.2 -0.5 8.5 141.1 140.4 1.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-89   SER-90  7.8 8.2 -162.9 -84.6 103.6 146.2 195.2
 SER-90   LEU-91  6.5 6.6 -73.4 10.0 109.0 101.5 -68.2
 LEU-91   GLU-92  3.4 3.3 -3.4 8.0 45.1 43.0 -20.7
 GLU-92   SER-93  2.6 2.1 25.9 -45.0 133.4 130.0 42.1
 SER-93   GLY-94  2.9 2.8 22.0 -11.9 71.0 66.4 13.7
 GLY-94   LEU-95  4.3 5.1 9.8 -3.4 85.1 87.5 -1.4
 LEU-95   ALA-96  7.4 7.6 -13.3 5.2 151.1 147.5 -50.2
 ALA-96   LEU-97  7.3 7.6 5.6 -3.9 52.9 57.9 13.1
 LEU-97   LYS-98  9.8 10.2 -22.5 -8.5 148.6 156.3 -90.9
 LYS-98   ASN-99  8.8 9.6 -8.3 -5.8 108.8 128.2 -35.1
 ASN-99   SER-100  8.0 9.8 3.9 -74.9 133.5 110.8 143.8
 SER-100   ASP-101  7.8 11.2 22.8 37.7 73.3 108.1 -33.7
 ASP-101   MET-102  8.9 11.2 -28.3 10.1 43.3 45.8 45.2
 MET-102   ASP-103  8.2 8.7 -1.8 37.6 54.2 60.6 -108.4
 ASP-103   LEU-104  10.3 10.9 6.4 -2.7 116.2 108.3 -11.3
 LEU-104   CYS-105  11.4 11.5 5.0 -7.7 124.1 120.0 -2.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-162   PHE-163  17.4 17.6 -1.2 0.7 65.3 69.1 -10.5
 PHE-163   ASN-164  19.2 19.6 8.7 152.6 173.2 173.7 645.3
 ASN-164   ASN-165  18.6 19.1 137.6 -2.5 110.3 115.7 -396.9
 ASN-165   ARG-166  16.6 19.4 103.4 0.3 129.0 98.6 -180.4
 ARG-166   LEU-167  14.7 17.1 10.9 8.7 113.8 133.3 -20.2
 LEU-167   ALA-168  14.3 15.6 13.9 3.9 56.9 64.6 52.3
 ALA-168   ILE-169  12.4 13.7 14.0 -2.1 93.5 83.6 9.2
 ILE-169   HIS-170  10.0 11.1 15.4 -3.2 145.8 137.4 -26.7
 HIS-170   ASN-171  9.3 9.7 6.4 1.0 88.1 83.2 -2.4
 ASN-171   THR-172  9.6 9.9 3.8 -7.3 62.4 58.7 6.1
 THR-172   LEU-173  6.7 7.1 0.7 -1.3 123.2 122.3 6.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees