Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-109   ILE-110  6.7 6.3 -38.0 28.9 66.6 64.8 29.5
 ILE-110   SER-111  5.1 4.7 -7.3 -8.6 26.2 32.9 89.5
 SER-111   ILE-112  5.6 5.6 6.0 -4.7 113.3 117.4 -29.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-190   SER-191  1.3 1.6 19.2 -6.5 28.7 22.9 85.4
 SER-191   THR-192  3.8 4.0 7.3 1.5 63.8 69.8 57.0
 THR-192   SER-193  5.6 5.8 2.0 -3.6 63.2 62.0 -16.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-196   VAL-197  6.4 6.6 9.0 -9.7 128.8 127.6 5.5
 VAL-197   THR-198  4.8 4.7 -10.1 -6.9 29.4 27.2 105.2
 THR-198   GLN-199  2.5 2.5 13.1 -5.0 134.4 130.0 -56.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-207   GLY-208  8.1 8.3 -5.6 -19.3 34.9 38.7 155.8
 GLY-208   GLY-209  10.8 10.9 20.6 -28.5 112.8 114.3 -15.0
 GLY-209   LEU-210  11.8 10.9 3.2 15.8 135.7 143.8 -105.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees