Preprotein Translocase Seca Subunit

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ILE-223   SER-224  5.3 7.4 17.3 -32.9 159.2 156.5 18.2
 SER-224   GLY-225  5.1 7.4 -17.9 -73.4 74.5 61.0 55.5
 GLY-225   GLN-226  3.4 5.6 57.6 -8.4 125.2 149.8 -77.4
 GLN-226   ALA-227  6.6 3.9 166.9 26.4 164.7 84.0 -139.3
 ALA-227   ALA-228  4.9 2.7 161.7 153.5 112.7 99.8 85.9
 ALA-228   LYS-229  3.0 1.0 -137.5 29.4 82.3 67.8 36.2
 LYS-229   SER-230  1.4 3.6 13.5 -9.7 159.7 121.1 -13.4
 SER-230   THR-231  2.3 6.4 -136.2 77.9 53.9 13.9 67.9
 THR-231   LYS-232  3.3 4.6 -38.1 -22.4 49.2 44.9 58.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ASN-277   LEU-278  25.2 24.7 23.1 6.6 95.1 94.8 7.6
 LEU-278   PHE-279  22.6 21.6 29.6 -41.1 152.9 150.6 12.5
 PHE-279   ASP-280  23.7 21.0 20.9 -23.8 133.9 105.2 7.8
 ASP-280   VAL-281  23.0 21.4 -156.5 -33.2 61.9 82.7 117.5
 VAL-281   LYS-282  20.4 17.9 135.8 21.1 74.6 140.8 -193.9
 LYS-282   HIS-283  18.5 16.1 153.2 -179.7 38.3 77.1 2.4
 HIS-283   VAL-284  17.7 12.8 -13.8 -64.2 82.0 154.4 204.3
 VAL-284   ALA-285  17.1 13.6 131.5 -11.9 60.3 86.5 158.1
 ALA-285   LEU-286  13.7 15.6 119.4 0.9 13.2 22.5 -323.9
 LEU-286   ASN-287  14.9 16.8 9.5 9.6 77.8 80.2 10.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ILE-345   GLN-346  6.6 5.7 14.1 25.8 146.8 128.4 -58.1
 GLN-346   ASN-347  7.8 6.5 14.6 11.3 137.9 137.0 -34.7
 ASN-347   GLU-348  6.0 4.8 -39.7 -53.5 26.8 51.1 91.8
 GLU-348   SER-349  7.2 6.9 -4.6 -11.6 55.9 23.5 31.4
 SER-349   MET-350  5.2 7.5 -15.8 -39.0 61.0 62.4 33.9
 MET-350   THR-351  3.9 7.5 23.7 10.4 171.2 171.0 -40.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees