Nickel-Binding Periplasmic Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-37   VAL-38  8.4 8.3 0.8 1.5 58.3 59.5 27.8
 VAL-38   LYS-39  9.8 9.6 1.7 -0.9 22.3 23.1 -1.1
 LYS-39   TYR-40  9.7 9.5 -1.0 3.5 118.5 118.2 31.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-45   VAL-46  15.0 14.8 8.3 -7.6 79.6 79.8 42.3
 VAL-46   ILE-47  12.8 12.8 0.1 7.6 77.1 78.7 91.5
 ILE-47   PRO-48  14.6 14.4 0.4 -0.9 48.0 46.1 23.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-200   ASP-201  15.4 15.4 -2.8 5.0 136.9 138.6 85.0
 ASP-201   PRO-202  15.1 15.0 -0.2 -0.1 116.5 110.2 -36.0
 PRO-202   THR-203  11.8 11.6 2.8 -5.3 22.0 23.5 -19.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-214   ASP-215  13.6 13.5 -3.9 8.4 68.0 71.0 3.5
 ASP-215   LEU-216  12.2 12.1 -2.2 0.1 103.4 100.1 18.2
 LEU-216   LEU-217  8.8 8.8 1.7 0.8 74.4 75.1 3.3
 LEU-217   TYR-218  6.1 6.0 1.8 0.7 65.8 65.6 -22.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-490   GLU-491  1.8 2.0 1.6 1.2 88.3 87.5 17.6
 GLU-491   ILE-492  2.1 1.9 -2.2 0.1 23.1 23.2 42.6
 ILE-492   PRO-493  4.5 4.4 2.3 -0.9 76.7 77.9 23.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees