Pyruvate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-67   LYS-68  9.9 9.8 12.1 -7.5 99.6 98.3 -121.4
 LYS-68   GLY-69  11.1 11.3 -1.3 -0.4 79.8 78.7 -208.0
 GLY-69   PRO-70  8.3 8.5 9.2 -2.6 70.6 71.8 165.8
 PRO-70   GLU-71  9.5 9.5 -10.5 -0.2 55.0 50.8 200.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-72   ARG-73  16.0 16.1 17.7 -15.1 86.4 82.2 21.3
 ARG-73   THR-74  19.2 19.3 -10.6 5.3 65.9 66.4 143.9
 THR-74   MET-75  22.9 22.9 5.1 -8.1 139.5 139.2 30.5
 MET-75   LYS-76  24.4 24.2 7.1 4.5 89.1 89.9 -59.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-156   GLY-157  23.1 23.0 -7.1 -7.9 97.7 97.4 -107.9
 GLY-157   VAL-158  19.7 19.6 3.2 7.8 66.2 63.6 12.2
 VAL-158   ASN-159  19.2 19.0 -19.1 29.9 123.5 127.0 231.7
 ASN-159   LEU-160  17.2 17.3 -9.8 10.1 108.3 102.4 67.7
 LEU-160   PRO-161  17.8 17.8 -9.4 7.2 134.9 142.8 -182.3
 PRO-161   GLY-162  16.4 16.4 -1.5 -6.4 94.5 92.6 -52.6
 GLY-162   VAL-163  15.5 15.6 17.7 -18.7 152.3 152.6 178.8
 GLY-162   VAL-163  15.5 15.6 17.7 -18.7 152.3 152.6 178.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-162   VAL-163  15.5 15.6 17.7 -18.7 152.3 152.6 178.8
 GLY-162   VAL-163  15.5 15.6 17.7 -18.7 152.3 152.6 178.8
 VAL-163   SER-164  16.0 16.0 4.9 -9.6 113.6 111.8 -119.8
 SER-164   ILE-165  13.8 13.7 -13.4 9.7 27.2 19.7 16.6
 ILE-165   ALA-166  13.2 13.2 7.5 -10.6 133.6 129.8 99.2
 ALA-166   LEU-167  12.5 12.2 10.3 3.1 127.7 128.3 -218.8
 LEU-167   PRO-168  10.3 10.2 3.4 -12.7 91.6 96.3 -104.2
 LEU-167   PRO-168  10.3 10.2 3.4 -12.7 91.6 96.3 -104.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-167   PRO-168  10.3 10.2 3.4 -12.7 91.6 96.3 -104.2
 LEU-167   PRO-168  10.3 10.2 3.4 -12.7 91.6 96.3 -104.2
 PRO-168   ALA-169  6.9 6.8 -16.2 40.0 134.0 128.7 237.6
 ALA-169   LEU-170  3.7 3.5 14.9 -36.9 107.5 106.3 -25.8
 LEU-170   ALA-171  3.4 3.9 -13.5 13.9 51.8 44.8 -57.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees