Succinyl-Coa Ligase [Gdp-Forming] Beta-Chain, Mitochondrial

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-325   PHE-326  3.1 3.3 2.6 -9.3 117.3 120.3 8.3
 PHE-326   GLY-327  5.3 5.2 -6.5 -8.9 122.2 115.3 -80.5
 GLY-327   GLY-328  8.0 8.0 -163.9 159.9 67.8 59.8 89.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 CYS-343   ARG-344  5.5 5.3 -10.3 -1.8 26.4 17.8 83.0
 ARG-344   GLU-345  4.9 4.8 16.6 -14.4 121.5 120.4 -18.4
 GLU-345   LEU-346  6.1 6.1 -10.3 -2.4 108.1 104.1 11.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-355   LEU-356  3.2 3.0 -1.8 2.0 97.8 95.6 -7.2
 LEU-356   GLU-357  3.3 3.0 25.3 -21.6 130.4 134.0 -15.0
 GLU-357   GLY-358  5.7 5.5 1.8 -25.2 82.5 85.2 41.9
 GLY-358   THR-359  8.8 8.7 -28.3 48.8 115.1 132.6 156.7
 THR-359   ASN-360  11.5 11.5 -0.4 -22.5 142.5 146.2 -123.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-375   THR-376  8.8 8.9 -25.2 52.8 123.9 145.9 157.5
 THR-376   SER-377  9.9 10.1 -29.3 5.8 128.0 121.1 -87.5
 SER-377   ALA-378  8.5 8.0 -27.1 30.9 163.5 160.8 76.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees