Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-28   ILE-29  1.3 4.0 10.6 -4.6 47.0 56.6 7.0
 ILE-29   SER-30  0.8 3.7 26.1 -18.8 64.6 62.6 0.2
 SER-30   THR-31  3.4 1.7 26.9 2.2 52.8 56.7 45.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-59   PRO-60  10.8 10.4 -15.2 -25.6 40.6 49.3 62.5
 PRO-60   ASP-61  9.2 8.2 0.1 11.7 74.8 70.5 11.5
 ASP-61   GLU-62  5.5 4.7 11.6 -8.9 83.3 89.0 12.3
 GLU-62   VAL-63  6.7 7.3 4.2 -8.1 27.8 37.6 -10.5
 VAL-63   THR-64  8.8 9.5 8.7 1.5 39.2 36.2 18.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees