Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-109   GLY-110  2.4 2.1 -12.0 11.1 141.1 140.9 -13.8
 GLY-110   ILE-111  3.9 3.7 -1.3 -1.1 79.9 80.1 -2.8
 ILE-111   SER-112  6.2 6.2 -5.2 0.6 54.9 58.4 67.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-218   GLY-219  3.1 3.2 0.4 11.3 44.4 40.3 57.2
 GLY-219   TYR-220  4.6 4.7 -0.1 6.6 87.0 87.8 -27.3
 TYR-220   GLY-221  6.4 6.5 6.0 -2.3 95.7 95.3 16.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-254   TRP-255  5.7 5.6 -1.4 5.4 101.2 99.7 -11.8
 TRP-255   TYR-256  2.1 2.3 4.2 -1.7 142.8 142.6 -22.4
 TYR-256   ASP-257  0.5 0.3 -20.2 3.2 19.9 22.5 168.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees