Geranyltranstransferase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-232   ALA-233  0.8 0.6 3.2 3.6 109.3 110.0 -40.0
 ALA-233   GLU-234  4.4 4.2 -7.6 -4.4 28.9 34.7 103.6
 GLU-234   SER-235  3.5 3.4 1.0 9.1 85.8 81.8 28.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-293   SER-294  6.9 7.2 0.5 1.6 89.2 88.2 3.6
 SER-294   LEU-295  4.5 4.7 -0.9 -1.1 24.2 22.9 19.9
 LEU-295   LYS-296  3.1 3.4 -6.0 2.6 54.9 55.2 13.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-307   LEU-308  5.4 5.0 -5.3 2.2 8.8 13.0 59.0
 LEU-308   GLU-309  4.3 3.9 3.6 4.4 105.7 99.4 7.1
 GLU-309   ALA-310  4.8 4.4 -8.3 6.1 101.1 99.4 1.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees